Common Variant Genes — common_variant

This function finds common variant genes between two cell data sets.

Usage

common_variant_genes(
  cds1,
  cds2,
  top_n = 2000,
  logmean_ul = 2,
  logmean_ll = -6,
  row_data_column = "gene_short_name",
  unique_data_column = "id",
  verbose = T,
  plot = F
)

Arguments

cds1: The first cell data set.
cds2: The second cell data set.
top_n: The number of top genes to consider. Default is 2000.
logmean_ul: The upper limit for mean expression.
logmean_ll: The lower limit for mean expression.
row_data_column: The column in the feature data corresponding to the gene symbol.
unique_data_column: The column in the feature data corresponding to the unique id.
verbose: Boolean indicating whether to display verbose output.
plot: Boolean indicating whether to plot the results.

Value

A vector of similarly variant genes.